O Commowick and S K Warfield. Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from STAPLE.IEEE TMI, 2009, in press. [PDF]
M Krishnan, O Commowick, S S Jeste, N Weisenfeld, A Hans, M Gregas, M Sahin, and S K Warfield. Diffusion features of white matter in Tuberous Sclerosis Complex assessed with tractography. Pediatric Neurology 2009, in press.
P Wintermark, T Boyd, M M Parast, L J Van Marter, S K Warfield, R L Robertson, and S A Ringer. Fetal Placental Thrombosis and Neonatal Implications.Am J Perinatol. 66(5):555-9 2009. [WWW] [doi : 10.1055/s-0029-1239486] [PDF]
L M Vigneron, R C Boman, J-P Ponthot, P A Robe, S K Warfield and J G Verly. Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery.Journal of Computational and Applied Mathematics. 2009, in press.
O Commowick, S K Warfield and G Malandain. Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas.In Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'09), volume 5762 of LNCS, pages 993-1000, September 2009. [PDF]
A Akselrod-Ballin, D Bock, R C Reid and S K Warfield. Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma.In Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'09), volume 5761 of LNCS, pages 632-632, September 2009. [PDF]
G R Joldes, A Wittek, M Couton, S K Warfield and K Miller. Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms.In Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'09), volume 5762 of LNCS, pages 300-307, September 2009. [PDF]
O Commowick and S K Warfield. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE.Inf Process Med Imaging., 21:701-12 2009.
M Schaap, C T Metz, T van Walsum, A G van der Giessen, A C Weustink, N R Mollet, C Bauer, H Bogunovic, C Castro, X Deng, E Dikici, T O'Donnell, M Frenay, O Friman, M Hernández Hoyos, P H Kitslaar, K Krissian, C Kühnel, M A Luengo-Oroz, M Orkisz, O Smedby, M Styner, A Szymczak, H Tek, C Wang, S K Warfield, S Zambal, Y Zhang, G P Krestin, and W J Niessen. Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms.Med Image Anal., 13(5):701-14 2009. [WWW] [doi: 10.1016/j.media.2009.06.003]
L M Vigneron, M P Duflot, P A Robe, S K Warfield, and J G Verly . 2D XFEM-based modeling of retraction and successive resections for preoperative image update.Comput Aided Surg., Jul 27:1-20 2009. [WWW]
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J N L Benders, F Groenendaal, F van Bel, R Ha Vinh, J Dubois, J F Lazeyras, S K Warfield, P S Huppi, and L S de Vries. Brain development of the preterm neonate after neonatal hydrocortisone treatment for chronic lung diseasePediatric Research 66(5):555-9 2009. [WWW] [doi: 10.1203/PDR.0b013e3181b3aec5]
N I Weisenfeld and S K Warfield. Automatic Segmentation of Newborn Brain MRI.Neuroimage, 2009, in press. [WWW] [doi: 10.1016/j.neuroimage.2009.04.068] [PDF]
O Commowick and S K Warfield. A Continuous STAPLE for Scalar, Vector and Tensor Images: An Application to DTI Analysis.IEEETMI, 28(6):838-846 2009. [WWW] [doi: 10.1109/TMI.2008.2010438] [PDF]
M Rullmann,
A Anwander,
M Dannhauer,
S K Warfield,
F H Duffy,
and CH Wolters.
EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model.Neuroimage,
44(2):399-410 2009.
[WWW] [doi:10.1016/j.neuroimage.2008.09.009] [PDF]
D K Thompson,
S J Wood,
L W Doyle,
S K Warfield,
G F Egan,
and T E Inder
MR-determined hippocampal asymmetry in full-term and pre-term neonates.Hippocampus
19(2):118-23 2009. [WWW] [doi: 10.1002/hipo.20492] [PDF]
M S De Craene, B Macq, F Marques, P Salembier, and S K Warfield. Unbiased Group-wise Alignment by Iterative Central Tendency Estimation.Math. Model. Nat. Phenom., 3(6):2-32 2008. [PDF]
Ž Špiclin,
A Hans,
F H Duffy,
S K Warfield,
B Likar,
and F Pernus.
EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv.,
11(Pt 1):762-70, 2008. [WWW] [PDF]
O Commowick,
P Fillard,
O Clatz,
and S K Warfield.
Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients.Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv.,
11(Pt 1):975-82, 2008. [WWW] [PDF]
S K Warfield,
K H Zou,
and W M Wells.
Validation of image segmentation by estimating rater bias and variance.Phil. Trans. R. Soc. A,
366(1874):2361-75, April 2008. [WWW] [doi: 10.1098/rsta.2008.0040] [PDF]
D K Thompson,
S J Wood,
L W Doyle,
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G A Lodygensky,
P J Anderson,
G F Egan,
and T E Inder.
Neonate Hippocampal Volumes: Prematurity, Perinatal Predictors, and 2-Year Outcome.Annals of Neurology, 63(5):642-51, April 2008. [WWW][doi: 10.1002/ana.21367] [PDF]
G A Lodygensky,
M L Seghier,
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C B Tolsa,
S Sizonenko,
F Lazeyras,
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Intrauterine Growth Restriction Affects the Preterm Infant's Hippocampus.Pediatr Res,
63(4):438-443, April 2008.
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M J Rivkin,
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J L Lemaster,
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C D Robson,
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and D A Frank
Volumetric MRI study of brain in children with intrauterine exposure to cocaine, alcohol, tobacco, and marijuana.Pediatrics.,
121(4): 741-50, April 2008.
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S K Warfield
and W M Wells. A unified framework for clustering and quantitative analysis of white matter fiber tracts.Med Image Anal,12(2):191-202, April 2008. [WWW] [doi: 10.1016/j.media.2007.10.003] [PDF]
J Dubois, M Benders, C Borradori-Tolsa, A Cachia, F Lazeyras, R Ha-Vinh Leuchter, S V Sizonenko, S K Warfield, J F Mangin, and P S Hüppi. Primary cortical folding in the human newborn: an early marker of later functional development.Brain, 131:2028-2041, August 2008. [WWW] [doi: 10.1093/brain/awn137] [PDF]
L Hoyte, M S Damaser, S K Warfield, G Chukkapalli, A Majumdar, D J Choi, A Trivedi, and P Krysl. Quantity and distribution of levator ani stretch during simulated vaginal childbirth.Am J Obstet Gynecol, 199(2):198.e1-198.e5, August 2008. [WWW] [doi: 10.1016/j.ajog.2008.04.027] [PDF]
J J Wisco, D L Rosene, R J Killiany, M B Moss, S K Warfield, S Egorova, Y Wu, Z Liptak, J Warner, and C R Guttmann. A rhesus monkey reference label atlas for template driven segmentation.J Med Primatol, 37(5):250-60, October 2008. [WWW] [doi: 10.1111/j.1600-0684.2008.00288.x] [PDF]
J J Wisco,
R J Killiany,
C R Guttmann,
S K Warfield,
M B Moss,
and D L Rosene. An MRI study of age-related white and gray matter volume changes in the rhesus monkey.Neurobiol Aging, 29(10):1563-75, Oct 2008. [WWW]
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N Archip, O Clatz, S Whalen, S P Dimaio, P M Black, F A Jolesz, A Golby, and S K Warfield. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery.Neurosurgery, 62(3 Suppl 1):209-15; discussion 215-6, March 2008. [WWW] [doi: 10.1227/01.neu.0000317395.08466.e6] [PDF]
A Wittek,
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Patient-specific model of brain deformation: Application to medical image registration.
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40(4): 919-29 2007.
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and T E Inder.
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Brain,
130(Pt 3): 667-77 March 2007.
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Probabilistic clustering and quantitative analysis of white matter fiber tracts.Inf Process Med Imaging,
20: 372-83 2007.
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J Fripp,
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Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee.Phys Med Biol,
52(6): 1617-31, March 2007.
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N Archip,
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35(2): 609-24, April 2007.
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15;36(4):1074-85, July 2007. [WWW] [doi: 10.1016/j.neuroimage.2007.04.011]
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Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain.Neuroimage,
37(2):530-8, August 2007.
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A validation framework for brain tumor segmentation.Acad Radiol,
14(10):1242-51, October 2007. [WWW] [doi: 10.1016/j.acra.2007.05.025]
K T Downing,
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Racial differences in pelvic floor muscle thickness in asymptomatic nulliparas as seen on magnetic resonance imaging-based three-dimensional color thickness mapping.Am J Obstet Gynecol,
197(6):625.e1-4, December 2007. [WWW] [doi: 10.1016/j.ajog.2007.08.015 ]
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10(Pt 2): 969-77, 2007.
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Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data.Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv.
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10(Pt 2): 186-94, 2007.
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D F Kacher,
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IEEE Eng Med Biol Mag,
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1:658-661, 2006. [PDF]
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A U Mewes,
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Reduction in cerebellar volumes in preterm infants: relationship to white matter injury and neurodevelopment at two years of age.
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Invest Ophthalmol Vis Sci,
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Combining classifiers using their receiver operating characteristics and maximum likelihood estimation.
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IEEE Trans Med Imaging,
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X Wei,
C R Guttmann,
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M Eliasziw,
and J R Mitchell.
Has your patient's multiple sclerosis lesion burden or brain atrophy actually changed?.
Mult Scler,
10(4):402-406,
August 2004.
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L C Wiegand,
S K Warfield,
J J Levitt,
Y Hirayasu,
D F Salisbury,
S Heckers,
C C Dickey,
R Kikinis,
F A Jolesz,
R W McCarley,
and M E Shenton.
Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study.
Biol Psychiatry,
55(2):131-140,
January 2004.
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K H Zou,
S K Warfield,
A Bharatha,
C M Tempany,
M R Kaus,
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F A Jolesz,
and R Kikinis.
Statistical validation of image segmentation quality based on a spatial overlap index.
Acad Radiol,
11(2):178-189,
February 2004.
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K H Zou,
W M Wells,
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Three validation metrics for automated probabilistic image segmentation of brain tumours.
Stat Med,
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V Grau,
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S Jaume,
M Ferrant,
B Macq,
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Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans.
IEEE Trans Biomed Eng,
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K H Zou,
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Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data.
Acad Radiol,
10(12):1359-1368,
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R W Hunt,
S K Warfield,
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Assessment of the impact of the removal of cerebrospinal fluid on cerebral tissue volumes by advanced volumetric 3D-MRI in posthaemorrhagic hydrocephalus in a premature infant.J Neurol Neurosurg Psychiatry,
74(5):658-60, May 2003.
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M Ferrant,
A Nabavi,
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Med Image Anal,
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J R Fielding,
L X Hoyte,
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A Schreyer,
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M Hirose,
A Bharatha,
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Quantitative MR imaging assessment of prostate gland deformation before and during MR imaging-guided brachytherapy.
Acad Radiol,
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J Ruiz-Alzola,
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Nonrigid registration of 3D tensor medical data.Med Image Anal.,
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X Wei,
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J Magn Reson Imaging,
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R R Benson,
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Older people with impaired mobility have specific loci of periventricular abnormality on MRI.Neurology,
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